Journées Ouvertes en Biologie, Informatique et Mathématiques

›8:45 (15min)

Welcome coffee

› Espace vieux-port

8:45 - 9:00 (15min)

Welcome coffee

Espace vieux-port

›9:00 (1h)

Keynote: Pierre Antoine Gourraud

› Auditorium

9:00 - 10:00 (1h)

Keynote: Pierre Antoine Gourraud

Auditorium

›10:00 (40min)

New challenges for bioinformatics in the personalized medicine era
Chair: Emmanuel Barillot

› Auditorium

10:00 - 10:40 (40min)

New challenges for bioinformatics in the personalized medicine era

Auditorium

Chair: Emmanuel Barillot

› Bayesian Genome-Wide Association Study to discover novel lifespan-associated loci - Ninon Mounier, Swiss Institute of Bioinformatics, Lausanne 1015, Switzerland, Institute of Social and Preventive Medicine (IUMSP), Lausanne University Hospital, Lausanne 1010, Switzerland 10:00-10:20 (20min)

› Aggregation of rare family-specific variants associated with Rheumatoid Arthritis - Maëva Veyssiere, GenHotel 10:20-10:40 (20min)

›10:40 (30min)

Booths in Exhibition Zone

10:40 - 11:10 (30min)

Booths in Exhibition Zone

omicX, EMBL-EBI, Cancéropôle PACA

›10:40 (30min)

Coffee Break

› Espace vieux-port

10:40 - 11:10 (30min)

Coffee Break

Espace vieux-port

›11:10 (1h)

New challenges for bioinformatics in the personalized medicine era
Chair: Nicolas Thierry-Mieg

› Auditorium

11:10 - 12:10 (1h)

New challenges for bioinformatics in the personalized medicine era

Auditorium

Chair: Nicolas Thierry-Mieg

› Sarek, a portable workflow for WGS analysis of germline and somatic mutations - Maxime Garcia, The Swedish Childhood Tumor Biobank, Dept. of Oncology Pathology, National Genomics Infrastructure, Science for Life Laboratory, Karolinska Institutet 11:10-11:30 (20min)

› I-LowVarFreq : improving low-frequency variant detection using a new UMI-based variant calling approach for paired-end sequencing NGS libraries. - Pierre-Julien VIAILLY, Centre Henri Becquerel, 76000 Rouen, France, Normandie Univ, UNIROUEN, INSERM U1245, Team “Genomics and Biomarkers of Lymphoma and Solid Tumors”, 76000 Rouen 11:30-11:50 (20min)

› From individual genetic variations towards haplotype: GEMPROT, a new way of reading VCF files - Tania Cuppens, UMR1078 "Génétique, Génomique Fonctionnelle et Biotechnologies", INSERM, EFS, Université de Brest, IBSAM, CHU de Brest 11:50-12:10 (20min)

›11:10 (1h)

Bioinformatics for Bugs, Beasts and Greens
Chair: Eric Rivals

› DNA room

11:10 - 12:10 (1h)

Bioinformatics for Bugs, Beasts and Greens

DNA room

Chair: Eric Rivals

› A new rapid, flexible and intuitive software to simulate phylogenies of infections - Gonché DANESH, Laboratoire “Maladies Infectieuses et Vecteurs, Ecologie, Evolution et Contrôle” 11:10-11:30 (20min)

› Combining eDNA metabarcoding and supervised machine learning for routine environmental applications: an example with marine aquaculture - Tristan Cordier, Université de Genève 11:30-11:50 (20min)

› On improving the approximation ratio of the r-shortest common superstring problem - Raluca Uricaru, Laboratoire Bordelais de Recherche en Informatique 11:50-12:10 (20min)

›11:10 (1h)

Structural Bioinformatics/Proteomics
Chair: Bianca Habermann

› Protein room

11:10 - 12:10 (1h)

Structural Bioinformatics/Proteomics

Protein room

Chair: Bianca Habermann

› Assessing the functional impact of genomic alterations using proteogenomics - Georges Bedran, CEA/DRF/BIG/BGE/EDYP, UFR Sciences et Techniques - Université de Rouen, CEA/DRF/JACOB/CNRGH 11:10-11:30 (20min)

› Structural and dynamics studies of a potassium channel and disease-associated mutants - Charline FAGNEN, Laboratoire de Biologie et de Pharmacologie Appliquée, Institut de minéralogie, de physique des matériaux et de cosmochimie 11:30-11:50 (20min)

› NR-DBIND : A database dedicated to nuclear receptor binding data including negative data and pharmacological profile - Manon Réau, Laboratoire Génomique, Bioinformatique et Applications 11:50-12:10 (20min)

›12:10 (1h20)

Lunch

› Espace vieux-port

12:10 - 13:30 (1h20)

Lunch

Espace vieux-port

›12:10 (1h20)

Booths in Exhibition Zone

12:10 - 13:30 (1h20)

Booths in Exhibition Zone

omicX, EMBL-EBI, Cancéropôle PACA

›12:10 (1h20)

Cambridge 2 Marseille chat
Round table

› DNA room

12:10 - 13:30 (1h20)

Cambridge 2 Marseille chat

DNA room

Round table

›13:30 (1h)

Keynote: Eleftheria Zeggini

› Auditorium

13:30 - 14:30 (1h)

Keynote: Eleftheria Zeggini

Auditorium

›14:30 (40min)

New challenges for bioinformatics in the personalized medicine era
Chair: Karyn Megy

› Auditorium

14:30 - 15:10 (40min)

New challenges for bioinformatics in the personalized medicine era

Auditorium

Chair: Karyn Megy

› Unravelling human preimplantation development by single-cell RNA-Seq: from experiment design to cell fate trajectories. - Dimitri Meistermann, Centre de Recherche en Transplantation et Immunologie, Laboratoire des Sciences du Numérique de Nantes 14:30-14:50 (20min)

› Proteomic and phosphoproteomic analysis of medulloblastoma reveals distinct activated pathways between subgroups - Loredana Martignetti, Cancer et génôme: Bioinformatique, biostatistiques et épidémiologie d'un système complexe 14:50-15:10 (20min)

›15:10 (20min)

Flash Poster presentation 4x5'

› Auditorium

15:10 - 15:30 (20min)

Flash Poster presentation 4x5'

Auditorium

›15:30 (30min)

Pause

› Espace vieux-port

15:30 - 16:00 (30min)

Pause

Espace vieux-port

›16:00 (1h)

Poster session - Even numbers

16:00 - 17:00 (1h)

Poster session - Even numbers

Even numbers

›17:00 (1h)

Bioinformatics for Bugs, Beasts and Greens
Chair: Pascal Hingamp

› Auditorium

17:00 - 18:00 (1h)

Bioinformatics for Bugs, Beasts and Greens

Auditorium

Chair: Pascal Hingamp

› Comparative metagenomics highlighted a core of metabolic capabilities in multiple serpentinizing ecosystems - Eléonore Frouin, Institut méditerranéen d'océanologie 17:00-17:20 (20min)

› Single-cell genome study of marine protists in the framework of the Tara Oceans project - Léo d'Agata, Commissariat à l'Energie Atomique (CEA), Genoscope, Institut de Biologie François-Jacob 17:20-17:40 (20min)

› MACADAM a user-friendly MetAboliC pAthway DAtabase for complex Microbial community function analysis - Malo Le Boulch, GenPhySE - UMR 1388 17:40-18:00 (20min)

›17:00 (1h)

New challenges for bioinformatics in the personalized medicine era
Chair: Anais Baudot

› DNA room

17:00 - 18:00 (1h)

New challenges for bioinformatics in the personalized medicine era

DNA room

Chair: Anais Baudot

› Fine-scale genetic population structure in western France - Christian Dina, Institut du Thorax 17:00-17:20 (20min)

› Identification de marques épigénétiques marqueurs de prédisposition aux maladies métaboliques - Jérémy Tournayre, Unité de Nutrition Humaine - Clermont Auvergne 17:20-17:40 (20min)

› Perturbed human sub-networks by Fusobacterium nucleatum candidate virulence proteins - Andreas Zanzoni, Theories and Approaches of Genomic Complexity 17:40-18:00 (20min)

›17:00 (1h)

Systems Biology/Functional Genomics
Chair: Benoit Bely

› Protein room

17:00 - 18:00 (1h)

Systems Biology/Functional Genomics

Protein room

Chair: Benoit Bely

› Biocuration and rule-based modelling of protein interaction networks in KAMI - Sébastien Légaré 17:00-17:20 (20min)

› Build your own multi-omics website with BACNET - Christophe Becavin, Institut Pasteur – Hub Bioinformatique et Biostatistique – C3BI, USR 3756 IP CNRS 17:20-17:40 (20min)

› Gigwa - Genotype Investigator for Genome-Wide Analyses - Pierre Larmande, Institut de Biologie Computationnelle, Institut de Recherche pour le Développement 17:40-18:00 (20min)

›18:00 (1h30)

Social Events

18:00 - 19:30 (1h30)

Social Events

›18:00 (1h30)

Booths in Exhibition Zone

18:00 - 19:30 (1h30)

Booths in Exhibition Zone

omicX, EMBL-EBI, Cancéropôle PACA

›19:30 (1h)

Free evening

19:30 - 20:30 (1h)

Free evening